| |
|
|
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Agricultura Digital. |
|
Data corrente: |
24/12/2014 |
|
Data da última atualização: |
22/01/2020 |
|
Tipo da produção científica: |
Artigo em Anais de Congresso |
|
Autoria: |
BIEGELMEYER, P.; OLIVEIRA, M. M.; CARDOSO, L. L.; GOMES, C. C. G.; HIGA, R. H.; DIONELLO, N. J. L.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. |
|
Afiliação: |
PATRÍCIA BIEGELMEYER, UFPEL; MAURICIO MORGADO OLIVEIRA, BOLSISTA CPPSUL; LEANDRO LUNARDINI CARDOSO, BOLSISTA CPPSUL; CLAUDIA CRISTINA GULIAS GOMES, CPPSUL; ROBERTO HIROSHI HIGA, CNPTIA; NELSON JOSÉ LAURINO DIONELLO, UFPEL; ALEXANDRE RODRIGUES CAETANO, CENARGEN; JUAN P. STEIBEL, Michigan State University; FERNANDO FLORES CARDOSO, CPPSUL. |
|
Título: |
Estimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds. |
|
Ano de publicação: |
2014 |
|
Fonte/Imprenta: |
In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. |
|
Páginas: |
Não paginado. |
|
Idioma: |
Inglês |
|
Conteúdo: |
A set of 41,241 SNP genotypes from 2,435 Hereford (HH) and Braford (BO) bovines were analyzed to estimate linkage disequilibrium (LD) levels, persistence of phase and effective population size of these populations. LD levels were estimated using the squared correlation of alleles at two loci (r2) at varying distances. Average r2 between adjacent SNP was 0.21 for HH and 0.16 for BO. Average inter-marker distance was 61 kb in both breeds. Useful LD values (r2>0.2) were observed at 0-60 kb bins in HH and 0-20 kb bins in BO. Breeds demonstrated moderate to strong persistence of phase at all distances (range=0.53-0.97). The greatest phase correlations (r>0.9) were found in 0-50 kb bins. LD estimates decreased rapidly with increasing distances between SNPs, however, useful LD was observed in genomic regions spanning up to ~50 kb. |
|
Palavras-Chave: |
Desequilíbrio de ligação; Persistence of phase; Tamanho populacional. |
|
Thesagro: |
Gado de corte. |
|
Thesaurus Nal: |
Beef cattle; Linkage disequilibrium; Population size. |
|
Categoria do assunto: |
-- |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/114443/1/estimation-Biegelmeyer.pdf
|
|
Marc: |
LEADER 01874nam a2200301 a 4500
001 2003699
005 2020-01-22
008 2014 bl uuuu u00u1 u #d
100 1 $aBIEGELMEYER, P.
245 $aEstimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds.$h[electronic resource]
260 $aIn: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS$c2014
300 $aNão paginado.
520 $aA set of 41,241 SNP genotypes from 2,435 Hereford (HH) and Braford (BO) bovines were analyzed to estimate linkage disequilibrium (LD) levels, persistence of phase and effective population size of these populations. LD levels were estimated using the squared correlation of alleles at two loci (r2) at varying distances. Average r2 between adjacent SNP was 0.21 for HH and 0.16 for BO. Average inter-marker distance was 61 kb in both breeds. Useful LD values (r2>0.2) were observed at 0-60 kb bins in HH and 0-20 kb bins in BO. Breeds demonstrated moderate to strong persistence of phase at all distances (range=0.53-0.97). The greatest phase correlations (r>0.9) were found in 0-50 kb bins. LD estimates decreased rapidly with increasing distances between SNPs, however, useful LD was observed in genomic regions spanning up to ~50 kb.
650 $aBeef cattle
650 $aLinkage disequilibrium
650 $aPopulation size
650 $aGado de corte
653 $aDesequilíbrio de ligação
653 $aPersistence of phase
653 $aTamanho populacional
700 1 $aOLIVEIRA, M. M.
700 1 $aCARDOSO, L. L.
700 1 $aGOMES, C. C. G.
700 1 $aHIGA, R. H.
700 1 $aDIONELLO, N. J. L.
700 1 $aCAETANO, A. R.
700 1 $aSTEIBEL, J. P.
700 1 $aCARDOSO, F. F.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
| Registros recuperados : 10 | |
| 2. |  | CARDOSO, F. F.; STEIBEL, J. P.; ROSA, G. J. M.; ERNST, C. W.; BATES, R. O.; TEMPELMAN, R. J. Assessment of different selective phenotyping design strategies for genomics studies with outbred F2 populations. Journal of Animal Science, Savoy, v. 85, p. 373, 2007. Supplement 1.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
|   |
| 3. | | BIEGELMEYER, P.; OLIVEIRA, M. M.; CARDOSO, L. L.; GOMES, C. C. G.; HIGA, R. H.; DIONELLO, N. J. L.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. Estimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. Não paginado.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
|  |
| 4. | | BIEGELMEYER, P.; OLIVEIRA, M. M.; GOMES, C. C. G.; HIGA, R. H.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. Linkage disequilibrium and persistence of phase in Hereford and Braford cattle. In: ANNUAL MEETING BRAZILIAN SOCIETY OF ANIMAL SCIENCE, 50., 2013, Campinas. The integration of knowledge in animal production: abstracts. Campinas: SBZ, 2013. Não paginado. Resumo 6GYR.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
|  |
| 5. | | BIEGELMEYER, P.; OLIVEIRA, M. M.; GULIAS-GOMES, C. C.; HIGA, R. H.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. Linkage disequilibrium and persistence of phase in Hereford and Braford cattle. In: ANNUAL MEETING BRAZILIAN SOCIETY OF ANIMAL SCIENCE, 50., 2013, Campinas. The integration of knowledge in animal production: abstracts. Campinas: SBZ, 2013. Não paginado. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 6. | | BIEGELMEYER, P.; OLIVEIRA, M. M.; CARDOSO, L. L.; GOMES, C. C. G.; HIGA, R. H.; DIONELLO, N. J. L.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. Estimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. Não paginado.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
| |
| 7. | | BIEGELMEYER, P.; OLIVEIRA, M. M.; CARDOSO, L. L.; GULIAS-GOMES, C. C.; HIGA, R. H.; DIONELLO, N. J. L.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. Estimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 8. | | ERNST, C. W.; STEIBEL, J. P.; ROSA, G. J. M.; TEMPELMAN, R. J.; BATES, R. O.; RILINGTON, V. D.; RAGAVENDRAN, A.; RANEY, N. E.; RAMOS, A. M.; CARDOSO, F. F.; EDWARDS, D. B. Genome-wide expression QTL (eQYL) analysis of loin muscle tissue to identify candidate genes in pigs. In: ADSA CSAS ASAS JOINT ANNUAL MEETING, 2009, Montreal. Electronic abstracts... Champaign: ADSA: ASAS, 2009. LB4. Publicado em: Jornal of Animal Science, Champaign, v. 87, p. ii, 2009. Electronic Supplement 2.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 9. | | STEIBEL, J. P.; BATES, R. O.; ROSA, G. J. M.; TEMPELMAN, R. J.; RILINGTON, V. D.; RAGAVENDRAM, A.; RANEY, N. E.; RAMOS, A. M.; CARDOSO, F. F.; EDWARDS, D. B.; ERNST, C. W. Genome-wide linkage analysis of gene expression of loin muscle tissue identifies candidate genes in pigs. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 9., 2010, Leipzig. Proceedings... Leipzig: German Society of Animal Science, 2010. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 10. | | STEIBEL, J. P.; BATES, R. O.; ROSA, G. J. M.; TEMPELMAN, R. J.; RILINGTON, V. D.; RAGAVENDRAN, A.; RANEY, NANCY E.; RAMOS, A. M.; CARDOSO, F. F.; EDWARDS, D. B.; ERNST, C. W. Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs. PLoS ONE, San Francisco, v. 6, n. 2, e16766, Feb. 2011.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| Registros recuperados : 10 | |
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
